Converting my report system to a MVC pattern

[eluser]Nick_MyShuitings[/eluser]
Depending on how your reports are broken down you could use something like Matchbox or Modular Separation to create a reporting module. In that module you could have controllers for each type of report, for example "user.php", "usage.php".

Then your files would be logically separated, and your urls would still be informative:

htpp://example.com/reporting/user/new following the format of http://url/module/controller/method.

I've had bad luck doing partial merges, so I'd personal retackle it as a CI project... its always helped reduce bugs and overall work in the long run for me.