Trying to get rid of index.php from address on my ubuntu system

Tried all that but it wasn't what the issue is (I have found the issue).  So this is here if anyone else has the issue.

What I found out is for some reason the .htaccess file wasn't showing as a .htaccess file type (could of happened with mixing with windows, I don't know) it was instead showing as just a file.  So I grabbed it all again from my git and copied the folder in instead and noticed that looking at the folder in files on ubuntu you cannot see the .htaccess file, but in terminal you can.

So if you ever have this kind of issue, check your .htaccess, if you can see it in files then there is an issue.

Thanks to all that helped me narrow down this issue.