base_url() and url helper

[eluser]elaniobro[/eluser]
In my copy of CI, the config.php includes a comment just above the $config['base_url'] section that reads:

Code:

| URL to your CodeIgniter root. Typically this will be your base URL,
| WITH a trailing slash:

Is yours different?[/quote]


No, mine is the same. Perhaps my folder structure is not set up correctly.
I have my site living here:

system/application/mysite

Is this not correct? Should it be moved? maybe that would alleivate the issues I am having.