[eluser]mddd[/eluser]
@Fumigator:
If you use urls like
css/mycss.css then yes that is a problem because a file that is accessible from / will not be accessible from /mycontroller/mymethod.
I always use "semi relative" paths. Like
/css/mycss. They are easy to type and read in your view and have no problems if you change domains or subdomains.
I know, it is a bit less flexible because you can't put the whole CI structure in a folder but it it very rare that I want to do that.