Remove index.php is not SEO friendly

[eluser]CroNiX[/eluser]
It doesn't matter if it works with "index.php" in the url. The point is, you don't use those links that have "index.php" in them on any pages and so they don't get cataloged by search engines. Search engines don't know about pages unless there is a link to that page. Do you think google just makes up urls to test to see if they go somewhere? No, they only follow links.

So, just use the CI url helpers to generate all of your urls and there won't be a problem as they won't ever put "index.php" in the url unless you don't have CI set up correctly when removing index.php from the url.