[eluser]bretticus[/eluser]
[quote author="Scott Radcliff" date="1253580802"]
Has anyone ran into this problem?[/quote]
Yeah I made the same dumb mistake. And I hate subversion BTW. The trick is to:
1. Remove the folder with svn delete {folder_path}.
2. Commit first! svn commit -m “deleting old outdated folder…”
3. Copy the new folder into place. cp -r {new_folder_path} {old_folder_path)
4. Add new folder to repo. svn add {folder_path}
5. Commit to add back that folder.
That way your commit can delete the system folder and then recreate it. I'm sure there is a more elegant way. Seems like it all started a cascade of other issues and I ended up checking out the project again before doing the above.
Good luck!