remove index.php of codeigniter subdomains

this is my directory:

       -sub-domain1 (codeigniter )
       -sub-domain2 (codeigniter )

             -index.php (used for codeigniter)
             -index.php (used for codeigniter)
         -index.php (used for codeigniter)
         - .htaccess

in my application/config/config.php is:
$config['index_page'] = "";

I didn't have the sub-domain1 and sub-domain2 and I wanted to apply them now. I am using same system for all CIs. I used the following htaccess file and it works perfect.

RewriteEngine On
    RewriteBase /

    #Removes access to the system folder by users.
    #Additionally this will allow you to create a System.php controller,
    #previously this would not have been possible.
    #'system' can be replaced if you have renamed your system folder.
    RewriteCond %{REQUEST_URI} ^system.*
    RewriteRule ^(.*)$ /index.php?/$1 [L]
    #When your application folder isn't in the system folder
    #This snippet prevents user access to the application folder
    #Submitted by: Fabdrol
    #Rename 'application' to your applications folder name.
    RewriteCond %{REQUEST_URI} ^application.*
    RewriteRule ^(.*)$ /index.php?/$1 [L]

    #Checks to see if the user is attempting to access a valid file,
    #such as an image or css document, if this isn't true it sends the
    #request to index.php
    RewriteCond %{REQUEST_FILENAME} !-f
    RewriteCond %{REQUEST_FILENAME} !-d
    RewriteRule ^(.*)$ index.php?/$1 [L]

    <IfModule !mod_rewrite.c>
    # If we don't have mod_rewrite installed, all 404's
    # can be sent to index.php, and everything works as normal.
    # Submitted by: ElliotHaughin

    ErrorDocument 404 /index.php

now when I add sub-domain1 and sub-domain2 I have problem with index.php. for main CI index.php is gone but for sub-domains I don't know how i can do that.

Code:           ok    ok  ok  NOT ok

please help me.

just put following htaccess in the sub-domain1 and sub-domain1 folders in root directory.
RewriteEngine on
RewriteCond $1 !^(index\.php|robots\.txt)
RewriteRule ^(.*)$ /index.php/$1 [L]

Hello All,

You can say that am new in development, just want to ask what is the defrance between -root and -www, as I know that -root contains -www and inside -www locate all my folders (System and Application).

Please advaice, thanks in advance.

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