[eluser]Florian Müller[/eluser]
In your View-Files you have a HTML-Structure, right? I personally made a new folder "scripts" in the folder "application" of CI. Them, you can copy them inside there and finally add something like this to your View:
Code:
< script type="text/javascript" src="http://yourdomain.com/application/scripts/yourscript.js">\</ script>