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One more thing to note about using the Autoloader instead of a flat array read from app/Config/Autoload.php is that the Autoloader supports multiple paths for a single namespace (like Composer) but the array in the config file does not.
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That's the way it should be done. The migrations stuff was done way before Composer was integrated into the file location process and I just didn't think about that, honestly. So Thanks!
I did make a comment on the PR that it might be better to user the FileLocator class instead of the autoloader directly, though.
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To close the loop on anyone reading this, third party migrations are now supported! If a package includes an appropriately namespaced migration then after it is installed you can run `php spark migrate:latest -all` to run the migrations without any other configuration. If you have security concerns (well you should really address those before installing) you can run individual namespaces with -n.
I have been adding the first command to composer.json in post-update-cmd so migrations are applied automatically on install/update.