[eluser]rogierb[/eluser]
It doesnt matter where you index.php is located. As long as the folders are set correctly within index.php
and the .htaccess resides in the same folder as index.php
You probabaly need something like:
config.php:
$config['index_page'] = "";
index.php:
$system_folder = "codeigniter/system";
$application_folder = "codeigniter/application";
.htaccess
RewriteEngine On
RewriteBase /
RewriteCond %{REQUEST_FILENAME} !-f
RewriteCond %{REQUEST_FILENAME} !-d
RewriteRule ^(.*)$ index.php/$1 [L]