Where is good plece to put JQuery?

[eluser]evstevemd[/eluser]
[quote author="KingSkippus" date="1279654096"]That's largely a matter of personal preference. Personally, I have a root-level directory structure like this:

/media
- /images
- /css
- /scripts
- ...

Then I exclude media from getting passed to CodeIgniter in my .htaccess file.[/quote]

Thanks.
I was confused on whether to put in CI directory or root.
I wanted an example from one actually using it!