Codeigniter plus SSL

[eluser]mallix[/eluser]
My base url is set to https

I have controllers and functions like http://domain/controller/function

The paths seems to work with my base domain but when i move to controllers or functions in the URL
It gets out of the Secure URI while it https://domain/controller

Like: https://www.domain.com works but https://www.domain.com/panel/login does not.

If i move CI specific rules for styles or js to to the bottom of the htaccess file then those styles and js files are missing..