Remove index.php from URL

Code:

<a href="#section-1">Section 1</a>

Also, often you can see links like

Code:

<a id="action" href="#">Action</a>

The base tag will modify behavior of anchor links like these and additional manual corrections would be needed.

http://www.ninthavenue.com.au/blog/using...th-anchors

Edit:
http://webdesign.tutsplus.com/articles/q...-cms-21399 - a better explanation.

Again, for a web application I would not recommend this way. Use absolute URLs for assets.