[eluser]mihaibaboi[/eluser]
[quote author="jrtashjian" date="1289888356"]However, if you want to run multiple applications off of the same CodeIgniter system directory, you would have to move it out.[/quote]
Very good point about multiple applications running off the same system folder, I didn't think of that.
[quote author="wiredesignz" date="1289888531"]If you like to apply CodeIgniter updates, then you won't overwrite your application with the CI default. Not that there are that many updates to worry about.

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I thought of that, but I don't think that's a problem. It would be, if you use a repository and update automatically, but if you download the archive from the website, you could just delete the default application folder before overwriting.